InSilico DB aggregates more than 250,000 samples of microarray and RNA–Seq data (human, mouse and rat) coming from public repositories including GEO and TCGA.
As an InSilico DB user
You have access to these data in a standardized format
You can run the following analysis tools: GENE–E, Morpheus, GenePattern, GenomeSpace, Integrative Genomics Viewer, R/Bioconductor and Ingenuity Pathways Analysis, without any programming skills
You can also upload your own data coming from your own research and run the same tools
You can aggregate analyses of your private data with public data
You can share your private data with selected users
As an InSilico DB user you also belong to a huge community of users contributing by adding data, curations and compilations.
What users are saying?
I really enjoy the experience of working with InSilico DB. The interface is clear and straightforward. Particularly, it is possible to directly retrieve the well-prepared genomic data and clinical data from your website. It saves me a lot of time: more than 5 hours of work per week! Thank you!
A powerful combination of user-friendly interface, largest public collections of gene expression data available!
InSilico DB changed the way we work. They are the only ones that made us believe and showed us interrogating genomics data was possible. We now use it routinely with GenePattern and Gene-E.
InSilico DB is a service that allowed bypassing the boring parts of bioinformatics and going straight to data analysis. The connectivity supported to other analysis platforms and databases is a fantastic version of plug-and-play research. InSilico MySafe is “magic” that allows the conversion of money into time for analysis.
My presentation was fantastic! I immediately referred my teammate on the project. I see myself using InSilico DB for all of my microarray experiments/analyses in the future. I'd be happy to refer this to anybody else I work with!
All your genomics needs solved in one place
Everything you need for genomics analysis in one place so that you can interrogate the data that matters to you.
InSilico DB takes care of storage, raw data processing, and samples labelling so you can focus on interpretation and analysis.
Public data that you can use
Find the data you need on our huge collection of ready-to-analyze
genomics data from published studies. Search by disease, author, or
gene across more than 250,000 samples.
The InSilico DB database is updated daily with content from various public repositories including GEO and TCGA.
Opening files with genomics data has never been easier
Quickly and independently get results from your experiments' data
files. You can easily import the Excel files and raw data you got
from your bioinformatician, or ask her to upload them for you.
Upload your files, label your samples, choose your analysis and jump to discovery.
Augment your analyses by including samples from other studies
Studies are composed of multiple samples. Advanced data
manipulation lets you pick samples across studies then assemble
them into a new aggregated study that contains exactly what you
Make data compilations, create subsets of samples from a large study, or compare your own data to existing published data.
Don't interrupt your research activities to deal with bioinformatics processing
Genomics measurements produce raw data that have to be processed
with bioinformatics programs, then formatted for different analysis
tools. This process can take a while, requires large computing
power, and updating results can be a nightmare.
InSilico DB's powerful computing platform takes care of this behind the scenes. You save time, while gaining reproducibility and consistency.
Efficient starting point to data interpretation
For when you need to interpret and present genomics data, get
immediate results. InSilico DB provides a direct link to heatmaps,
hierarchical clustering, Venn diagrams, genome viewer, pathway
analysis, and literrally hundreds more analysis modules.
The growing list of visualisation and analysis tools available on InSilico DB include: GENE-E, Morpheus, GenePattern, GenomeSpace, Integrative Genomics Viewer, R/Bioconductor and Ingenuity Pathways Analysis (Coming soon).
Add data and expertise to your research with the InSilico DB communnity
Need the key expertise of a colleague to help you interpret your
data? Need a colleague's data to prove an hypothesis? InSilico DB
3,500 strong community of researchers is the place to look.
The advanced sharing tools of InSilco DB lets you selectively share data simply within your group, or with collaborators worldwide.